If you wanna do a one off fix you can do something like this:
CODE
for r in nuke.allNodes('Read'):
curPath = r['file'].value()
r['file'].setValue(curPath.replace('/','//'))
For a workflow fix you can write a filenameFix() function which will be applied to all file paths in Nuke. Something like this in your init.py should do the job automatically:
CODE
def filenameFix(p):
if os.name == "win32":
p = p.replace('/', '//')
else:
p = p.replace('//', '/')
return p
I haven't tested the latter though so have a play and see how it behaves (not sure if I'm using the correct os.name for windows)