In addition to the Athlon/BOT issue, there seems to be a memory leak in using BOT files that causes lights to turn off. It might be a similar, more general, memory leak that you're encountering depending on your system and scene complexity.
The best suggestion I've heard to work around it is to write a simple .bat script that basically restarts the renderer after a certain number of frames:
render -fs 1 -fe 10 .....
render -fs 11 -fe 20....
Hope this helps and good luck!
Rob