Hi,
We had the problem recently when importing files (as .mb) into another files.
Some panels (rendering, UV editor) were then duplicated (hence the name "panel..1") and for some of them unusable.
We solved the problem by first converting the file to be imported to .ma, and removing at the end of the file all the lines relative to the UI preferences before importing it in another scene.
In your case, try to select your necessary objects, lights ... and export them as mb, then try opening the new file. I suppose the duplicates will be gone.
If not, export as .ma and go through the file to remove the lines referencing those panels.
Hope it helps, for a start.
Guyb.